Functions Reference

Functions in SpatialCells are divided into 5 modules:

• spatialcells.preprocessing
  • setGate
    • setGate()
  • setGates
    • setGates()
• spatialcells.spatial
  • assignPointsToRegions
    • assignPointsToRegions()
  • bufferBoundary
    • bufferBoundary()
  • estimateInitialDistance
    • estimateInitialDistance()
  • getBoundary
    • getBoundary()
  • getCommunities
    • getCommunities()
  • getExtendedBoundary
    • getExtendedBoundary()
  • getShrunkenBoundary
    • getShrunkenBoundary()
  • Utility functions
    • getAlphaShapes()
    • getComponents()
    • getHoles()
    • pruneSmallComponents()
• spatialcells.measurements
  • getCellKDE
    • getCellKDE()
  • getDistanceFromObject
    • getDistanceFromObject()
  • getDistanceFromPoint
    • getDistanceFromPoint()
  • getMPI
    • getMPI()
  • getMinCellTypesDistance
    • getMinCellTypesDistance()
  • getRegionArea
    • getRegionArea()
  • getRegionCentroid
    • getRegionCentroid()
  • getRegionComposition
    • getRegionComposition()
  • getRegionDensity
    • getRegionDensity()
  • getSlidingWindowsComposition
    • getSlidingWindowsComposition()
  • get_comp_mask
    • get_comp_mask()
• spatialcells.plotting
  • plotBoundary
    • plotBoundary()
  • plotCommunities
    • plotCommunities()
  • plotRegions
    • plotRegions()
• spatialcells.utils
  • exportRegion
    • exportRegion()
  • importRegion
    • importRegion()